I can see three Search/Filter sections.
These all seem to work together. There are a number of features in that search that Search & Filter cannot do.
For example. There are 3 text boxes for searching. Search & Filter allows only one. Two of these text boxes search individual taxonomies or custom fields. The latter Search & Filter cannot do.
Whilst it might be possible to split the sections into 3 parts, it would not be easy. It would at least require Custom CSS and probably some custom javascript. as would the formatting of the Image Type and Orientation options.
In summary, so of what you show in that example can be done out of the box, some requires Custom CSS and/or Custom Javascript, and some cannot be done with the plugin in its current form. Some of what you want may be added in the next major release, V3.